floria
latest
  • Introduction
  • Quick start
  • Tutorials
    • Tutorial 1: running floria and visualizing its outputs
  • Usage: input and output information
  • Utility scripts and visualization
  • How-to-guides
floria
  • Tutorials
  • Edit on GitHub

Tutorials

The below tutorials give step-by-step directions for running floria and also for learning about concepts used by floria.

  • Tutorial 1: running floria and visualizing its outputs
    • Prerequisites and running floria
    • Inputs
    • Output log
    • floria’s main outputs
      • contig_ploidy_info.tsv
      • NZ_CP081897.1.haplosets
      • Interpreting the haploset information
      • NZ_CP081897.1.vartigs
      • reads_without_snps.tsv
      • vartig_info.txt
      • Outputting reads
    • Visualizing vartigs/haplosets
    • Visualizing haplosets via IGV
    • Conclusion
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