Tutorials

The below tutorials give step-by-step directions for running floria and also for learning about concepts used by floria.

• Tutorial 1: running floria and visualizing its outputs
  • Prerequisites and running floria
  • Inputs
  • Output log
  • floria’s main outputs
    • contig_ploidy_info.tsv
    • NZ_CP081897.1.haplosets
    • Interpreting the haploset information
    • NZ_CP081897.1.vartigs
    • reads_without_snps.tsv
    • vartig_info.txt
    • Outputting reads
  • Visualizing vartigs/haplosets
  • Visualizing haplosets via IGV
  • Conclusion