Quick start

Install + quick start

See the github repository https://github.com/bluenote-1577/floria?tab=readme-ov-file#install–quick-start for installation instructions and how to do a basic run of floria.

In summary:

1. You can compile floria on linux and mac.

   • Only basic software like rust, gcc, cmake are required.

2. We offer a precompiled executable for linux

   • Should work for > 99% of linux users

3. Conda

   • Floria is also available through bioconda.

4. End-to-end snakemake pipeline

   • If you want an end-to-end reads-to-assembly snakemake pipeline, see the production workflow stated here: https://github.com/jsgounot/Floria_analysis_workflow. May take a bit more initial configuration.

To learn more about how floria works, start with the Introduction page and the Tutorials, in particular, the first tutorial Tutorial 1: running floria and visualizing its outputs picks up from this page.

For a deeper look at using floria effectively, see How-to-guides.